Preheat oven to 350°F then grease or line a muffin tin for 12 cupcakes.
In a large bowl, whisk together flour, pumpkin pie spice, baking powder, baking soda and salt. Set aside.
In a separate large bowl, combine pumpkin puree, maple syrup, coconut sugar, coconut oil, apple cider vinegar and vanilla extract. Stir until well combined.
Add the dry ingredients to the bowl with the wet and stir until a smooth batter forms. Using an ice cream scooper (or a dry measuring cup), fill each muffin tin ¾ of the way full.
Bake in the oven for about 22 minutes, or until a toothpick or fork comes clean when poked into the center. Allow to cool completely before frosting. Frost, then serve and enjoy!